Yes. We are completely committed to 100% backwards compatibility with ImageJ1. ImageJ2 includes the latest version of ImageJ1 "under the hood" so that existing macros, plugins and scripts will still run the same as before.
We have even gone so far as to model the ImageJ2 user interface after ImageJ1 to a very large extent, with all the same shortcut keys and behaviors whenever possible. ImageJ2 looks and feels like ImageJ1, but with a powerful new infrastructure allowing it to process a wider variety of image data more quickly and easily.
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